Dense sampling of bird diversity increases power of comparative genomics

  • C.R., M.T.P.G., G.R.G., F.L., E.D.J. and G.Z. initiated the B10K Project. S.F., J.S., Y.D., J.A., B. Paten and G.Z. conceived the current study. S.F., J.S., Y.D., A.H.R., G. Chen, C.G., J.T.H., G.P., E.C., J. Fjeldså, P.A.H., R.T.B., L.C., M.F.B., D.T.T., B.C.R., G.S., G.B., S.C., I.J.L., S.J.C., P.N., J.P.D., O.A.R., J. Fuchs, M.B., J.C., G.M., S.J.H., P.G.R., K.A.J., I.G.J., F.L., C.R., M.T.P.G., G.R.G., E.D.J. and G.Z. coordinated samples, including collection, shipping and permits. S.F., J.S., Y.D., Q.F., B.C.F., J.T.H., C.P., G.P., E.C., M.-H.S.S., Â.M.R., L.P., G.S., S.J.C., D.W.B., J.C., Q.L., H.Y., J.W., F.L., M.T.P.G., E.D.J. and G.Z. were involved in DNA extraction, sequencing or barcode confirmation. S.F., Y.D., B. Petersen, T.S.-P., Z.W. and Q.Z. performed the genome assemblies. S.F., J.S., Y.D., W.C., S.A.-S. and A.M. performed the mitochondrial genome assemblies and annotation. B.C.F., J.T.H., E.C., Â.M.R., R.T.B., D.T.T., I.J.L., A.S., M.S., P.B.F., B.H., H.S., S.P., H.v.d.Z., R.v.d.S., C.V., C.N.B., A.G.C., J.W.F., R.B., N.C., A. Cloutier, T.B.S., S.V.E., D.J.F., S.B.S., F.H.S., A.V., A.E.R.S., B.S., J.G.-S., J.F.-O., J.R., M.R., A.T., V.F., L.D., A.O.U., T.S., Y.L., M.G.C., A. Corvelo, R.C.F., K.M.R., N.J.G., N.D., H.M., N.T., K.D., M.L., A.F., M.P.H., O.K., A.M.F., B.M., E.D.K., A.E.F., G.F., Á.M.P.-M., P.F.B., M.P.C., N.C.B.L., F.P., T.L.P., B.A.S., B.A.L., J.G.B., H.C.L., L.B.D., M.J.F., M.W.B., M.J.B., M.W., R.B.D., T.B.R., G. Camenisch, L.F.K., J.M.D.C., M.E.H., M.I.M.L., C.C.W., J.A.M.G., J.M., L.C.M., M.D.C., B.W., S.A.T., G.D.-R., A.A., A.T.R.V., C.V.M., J.T.W., M.T.P.G. and E.D.J. supplied genome assemblies for additional species. S.F., J.S., Y.D., J.A., Q.F., D.X., G. Chen, B.C.F., L.E., D.W.B., R.R.d.F., E.L.B., P.H., S.M., A.S., D.H., M.T.P.G., E.D.J., B. Paten and G.Z. developed and improved annotation and orthologue identification pipelines, and analysed orthologues. S.F., J.S., Y.D., J.A., Q.F., D.X., B.C.F., M.D., D.H., B. Paten and G.Z. produced and analysed whole-genome alignments. J. Fjeldså illustrated the birds in Fig. 1. S.F., J.S., Y.D., J.A., Q.F., B. Paten and G.Z. wrote the manuscript, with input from all authors.

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